Applications & Industry Solutions

Emerging Contaminants: PFAS Analysis Explained

Per- and polyfluoroalkyl substances (PFAS) are a group of persistent environmental contaminants that have gained increasing attention due to their widespread presence and potential health risks. Often referred to as “forever chemicals,” PFAS are highly stable and resistant to degradation, making their detection and analysis critical in modern laboratories.

Accurate PFAS analysis requires high sensitivity, strict contamination control, and consistent sample preparation workflows. As laboratories face increasing demand for PFAS testing, automation plays a key role in improving reliability and efficiency, particularly when integrated with LC-MS/MS systems.

What are PFAS?

PFAS are a large family of fluorinated compounds used in a wide range of industrial and consumer applications, including:

  • Non-stick coatings
  • Water-repellent textiles
  • Firefighting foams
  • Food packaging materials

Their strong carbon–fluorine bonds contribute to their chemical stability and persistence, but also make them challenging to analyze at trace levels.

PFAS molecular structure carbon fluorine bond persistent chemicals
Figure 1. General structure of PFAS compounds highlighting the strong carbon–fluorine bond responsible for their persistence.

Why PFAS Analysis is Challenging

PFAS analysis is technically demanding due to several factors:

1. Ultra-Trace Detection Requirements

PFAS are often present at very low concentrations (ppb to ppt levels), requiring highly sensitive analytical techniques.

2. Risk of Background Contamination

PFAS can be found in:

  • Laboratory materials (tubing, solvents, containers)
  • Environmental background

This makes contamination control critical throughout the workflow.

3. Complex Sample Matrices

PFAS are analyzed in:

  • Drinking water
  • Wastewater
  • Soil and sludge
  • Food and packaging

Each matrix requires careful preparation and cleanup.

4. Large Number of Target Compounds

There are thousands of PFAS compounds, often requiring multi-analyte methods.

PFAS analysis challenges trace detection contamination complex matrices
Figure 2. Key challenges in PFAS analysis including ultra-trace detection, contamination risk, and complex sample matrices.

Analytical Workflow for PFAS Determination

PFAS analysis typically involves LC-MS/MS coupled with careful sample preparation to ensure accurate results.

Sample → Extraction → Cleanup (SPE) → Concentration → LC-MS/MS Analysis

Key Steps

  • Extraction
    Isolates PFAS compounds from environmental or food samples
  • Solid Phase Extraction (SPE)
    Concentrates analytes and removes matrix interferences
  • Sample Concentration
    Improves detection sensitivity
  • LC-MS/MS Analysis
    Provides selective and sensitive quantification
PFAS analysis workflow SPE LC-MS MS environmental testing diagram
Figure 3. Typical PFAS analytical workflow combining extraction, SPE cleanup, and LC-MS/MS analysis.

Role of Automated Sample Preparation in PFAS Analysis

Due to the complexity and sensitivity of PFAS workflows, manual sample preparation can introduce variability and contamination risks.

Automated systems, such as those offered by GERSTEL, provide a controlled and reproducible approach to sample handling.

Key Automation Capabilities

  • Automated SPE workflows
  • Precise solvent handling and sample transfer
  • Controlled extraction and cleanup steps
  • Integration with LC-MS/MS systems
  • Operation as standalone workstations

Automation ensures that each sample undergoes consistent preparation under controlled conditions, which is essential for trace-level analysis.

GERSTEL automated PFAS sample preparation SPE LC-MS MS system
Figure 4. Automated sample preparation system supporting PFAS analysis workflows with LC-MS/MS integration.

Benefits of Automation for PFAS Analysis

1. Reduced Contamination Risk

Automation minimizes manual handling, reducing the introduction of background PFAS contamination.

2. Improved Reproducibility

Consistent execution of SPE and preparation steps ensures reliable results across batches.

3. Enhanced Sensitivity

Controlled workflows help maintain low detection limits, critical for regulatory compliance.

4. Increased Throughput

Automated systems support high sample volumes, enabling efficient routine monitoring.

5. Standardized Methods

Automation allows laboratories to implement validated and repeatable workflows.

Applications of PFAS Analysis

PFAS testing is increasingly required across multiple sectors:

Environmental Monitoring

  • Drinking water and groundwater
  • Wastewater and sludge
  • Soil contamination studies

Food and Packaging

  • Migration from food contact materials
  • Contamination in processed foods

Industrial and Regulatory Testing

  • Compliance with environmental standards
  • Monitoring industrial discharge

Supporting Reliable PFAS Analysis

To ensure accurate PFAS results, laboratories should focus on:

  • Using PFAS-free materials and consumables
  • Implementing robust SPE cleanup methods
  • Minimizing manual handling steps
  • Adopting automation for critical workflows
  • Validating methods for target analytes

Automation plays a central role in achieving consistent, contamination-free, and reproducible results.

Conclusion

PFAS analysis presents unique analytical challenges due to ultra-trace detection requirements, contamination risks, and complex sample matrices. Reliable results depend on both advanced instrumentation and well-controlled sample preparation workflows.

By integrating automated sample preparation solutions such as GERSTEL systems with LC-MS/MS, laboratories can enhance efficiency, reproducibility, and data quality, supporting accurate monitoring of these emerging contaminants.

GERSTEL SPEXOS

GERSTEL SPEXOS

Online SPE system with replaceable SPE cartridges: The best of all worlds

GERSTEL SPEXOS expands your sample preparation portfolio with online SPE. Compared with sandard SPE, SPEXOS relies on much smaller cartridges with only 50 mg of sorbent, enabling a significant miniaturization of the entire process: Much smaller sample amounts are needed to reach required detection limits and much less solvent is needed for analyte elution reducing cost, simplifying logistics, and increasing method sensitivity.

PFAS Application Note

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📩 Contact LabAlliance to learn how automated PFAS analysis workflows using GERSTEL systems can improve your laboratory efficiency, reduce contamination risks, and support reliable LC-MS/MS analysis.
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